Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1507
total RNA-seq
454
ATAC-seq
320
single cell RNA-seq
212
DNase-seq
87
RNA microarray
57
pCHi-C
52
snATAC-seq
34
Hi-C
34
WGBS
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
52
DNA accessibility
Date released
27
February, 2021
May, 2022
16
January, 2021
6
August, 2021
2
February, 2023
1
August, 2022
Available data
27
fastq
Organism
52
Homo sapiens
Biosample type
35
primary cell
17
tissue
Organ
11
pancreas
8
blood
8
bodily fluid
6
kidney
Project
27
HPAP
18
T1D
7
AMP
Lab
27
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
Xin Sun, UCSD
6
Katalin Susztak, Upenn
1
AMP-T2D consortium
Audit category:
28
audit script error
month_released!
May, 2022
lab.title!
Xin Sun, UCSD
BIOSAMPLE
ASSAY
52 results
search-icon
table-tab-icon
Clear Filters
snATAC-seq
primary cell
Langerhans cell
27
peripheral blood mononuclear cell
8
tissue
islet of Langerhans
7
kidney
6
pancreas
4
Download