Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1507
total RNA-seq
454
ATAC-seq
329
single cell RNA-seq
212
DNase-seq
87
RNA microarray
61
snATAC-seq
57
pCHi-C
34
Hi-C
34
WGBS
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
61
DNA accessibility
Date released
27
February, 2021
May, 2022
16
January, 2021
10
April, 2020
6
August, 2021
2
February, 2023
August, 2022
Available data
27
fastq
Organism
60
Homo sapiens
Biosample type
35
primary cell
26
tissue
Organ
10
lung
10
pancreas
8
blood
8
bodily fluid
6
kidney
Project
27
HPAP
18
T1D
10
LungMap
6
AMP
Lab
27
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
27
audit script error
month_released!
May, 2022
August, 2022
month_released!!
May, 2022
BIOSAMPLE
ASSAY
61 results
search-icon
table-tab-icon
Clear Filters
snATAC-seq
primary cell
Langerhans cell
27
peripheral blood mononuclear cell
8
tissue
lung
10
islet of Langerhans
6
kidney
6
pancreas
4
Download