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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1613
ChIP-seq
1130
total RNA-seq
379
ATAC-seq
289
single cell RNA-seq
204
DNase-seq
87
RNA microarray
73
snATAC-seq
56
pCHi-C
25
Hi-C
24
WGBS
19
RRBS
16
small RNA-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
73
DNA accessibility
24
DNA methylation
Date released
27
February, 2021
22
May, 2022
12
July, 2019
10
April, 2020
9
August, 2017
8
January, 2021
6
August, 2021
3
November, 2018
Available data
34
fastq
21
zippedFastqFolder
14
bam
13
bed bedMethyl
13
bigBed bedMethyl
13
bigWig
1
bed bed3+
1
txt
Organism
96
Homo sapiens
Biosample type
56
primary cell
40
tissue
1
cell line
Organ
pancreas
47
epithelium
10
lung
8
blood
8
bodily fluid
8
heart
6
adipose tissue
6
connective tissue
6
kidney
5
liver
2
blood vessel
2
musculature of body
2
spleen
2
vasculature
1
limb
Project
48
HPAP
31
AMP
10
LungMap
8
T1D
Genome assembly (visualization)
13
GRCh38
1
hg19
Lab
48
Klaus Kaestner, Upenn
25
AMP-T2D consortium
10
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
6
Katalin Susztak, Upenn
Audit category:
28
audit script error
organ_slims!
pancreas
BIOSAMPLE
ASSAY
97 results
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snATAC-seq
WGBS
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
tissue
lung
10
kidney
6
heart left ventricle
4
adipose tissue
3
liver
3
+ See 9 more…
cell line
HepG2
1
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