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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
478
ChIP-seq
61
total RNA-seq
21
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
61
Transcription
21
DNA accessibility
Date released
27
February, 2021
20
May, 2021
17
August, 2021
6
March, 2020
5
January, 2019
4
October, 2019
2
November, 2019
1
January, 2018
Available data
62
tsv
55
bigWig
54
bam
5
fastq
2
bed narrowPeak
1
bed bed3
Organism
82
Homo sapiens
Biosample type
1246
tissue
445
primary cell
178
in vitro differentiated cells
82
cell line
Organ
60
artery
60
blood vessel
60
heart
vasculature
53
epithelium
52
pancreas
15
liver
8
embryo
4
kidney
1
blood
1
bodily fluid
Project
80
AMP
2
T1D
Genome assembly (visualization)
57
hg19
54
GRCh38
Lab
73
AMP-T2D consortium
9
Bing Ren, UCSD
Audit category:
55
inconsistent ontology term
1
inconsistent replicate
organ_slims!
vasculature
BIOSAMPLE
ASSAY
82 results
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total RNA-seq
ATAC-seq
cell line
EndoC_BH1
33
19
HepG2
14
1
H1-hESC
8
early embryonic cell
2
GM12878
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
glomerular visceral epithelial cell
1
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