Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1831ChIP-seq
  • 1439total RNA-seq
  • 417ATAC-seq
  • 312single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 82snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 33Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3snDrop-seq
  • 1DNAme array
  • 1MPRA
  • 1whole genome sequencing assay
Assay category
  • 1439Transcription
Date released
  • 545February, 2021
  • 190May, 2020
  • 182May, 2021
  • 120July, 2018
  • 89August, 2017
  • 74August, 2021
  • 44July, 2019
  • 30October, 2019
  • 26May, 2022
  • 26September, 2018
  • 25February, 2020
  • 20November, 2019
  • 16September, 2020
  • 15February, 2018
  • 15March, 2020
  • 6April, 2018
  • 5December, 2019
  • 5January, 2019
  • 4November, 2020
  • 2October, 2018
Available data
  • 1317tsv
  • 1288bam
  • 1284bigWig
  • 167fastq
  • 55txt
  • 2bed bed3+
Organism
  • 1439Homo sapiens
Biosample type
  • 1023tissue
  • 171primary cell
  • 132in vitro differentiated cells
  • 113cell line
Organ
  • 469connective tissue
  • 397adipose tissue
  • 361pancreas
  • 189liver
  • 92epithelium
  • 72heart
  • 61blood vessel
  • 61vasculature
  • 60kidney
  • 58bone element
  • 56artery
  • 17brain
  • 15eye
  • 14embryo
  • 7limb
  • 6musculature of body
  • 5nerve
  • 1pericardium
  • 1spinal cord
Project
  • 1323AMP
  • 100T1D
  • 16HPAP
Genome assembly (visualization)
  • 1284hg19
  • 1282GRCh38
Lab
  • 1234AMP-T2D consortium
  • 110Kyle Gaulton, UCSD
  • 49Katalin Susztak, Upenn
  • 20Karen Mohlke, UNC
  • 16Klaus Kaestner, Upenn
  • 10Bing Ren, UCSD
Audit category:
  • 128inconsistent ontology term
BIOSAMPLE
ASSAY

1439 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
tissue
adipose tissue381
islet of Langerhans293
liver167
bone tissue58
kidney49
primary cell
monocyte54
pancreatic alpha cell25
pancreatic beta cell11
hepatocyte5
osteoblast5
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
cell line
smooth muscle cell of the coronary artery52
EndoC_BH133
HepG214
H1-hESC8
early embryonic cell2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2023 Regents of the University of California.

  • UC San Diego