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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
857
ChIP-seq
243
total RNA-seq
128
single cell RNA-seq
61
ATAC-seq
27
snATAC-seq
17
WGBS
12
DNase-seq
5
GRO-seq
4
RRBS
2
FAIRE-seq
1
Hi-C
1
pCHi-C
Assay category
243
Transcription
61
DNA accessibility
Date released
94
August, 2017
76
February, 2023
40
September, 2018
24
May, 2022
19
September, 2020
15
February, 2018
8
October, 2017
7
August, 2020
6
April, 2018
5
January, 2019
5
September, 2017
2
July, 2018
2
October, 2018
1
March, 2019
Available data
1463
bam
1420
bigWig
1335
tsv
304
fastq
278
bed narrowPeak
64
xls
62
txt
39
zippedFastqFolder
27
bigBed narrowPeak
12
bed bed3
7
bed bedgraph
6
bed bed3+
2
bed broadPeak
Organism
304
Homo sapiens
Biosample type
152
primary cell
132
tissue
15
in vitro differentiated cells
5
cell line
Organ
240
pancreas
113
epithelium
6
liver
4
embryo
2
adipose tissue
2
connective tissue
1
brain
1
spleen
Project
202
AMP
102
HPAP
Genome assembly (visualization)
194
hg19
187
GRCh38
Lab
176
AMP-T2D consortium
102
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
BIOSAMPLE
ASSAY
304 results
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total RNA-seq
ATAC-seq
primary cell
pancreatic alpha cell
52
13
exocrine cell
39
pancreatic beta cell
21
10
pancreatic acinar cell
4
5
pancreatic ductal cell
4
4
tissue
islet of Langerhans
103
20
body of pancreas
4
cerebellum (Hemisphere)
1
omental fat pad
1
right lobe of liver
1
+ See 2 more…
in vitro differentiated cells
pancreatic endoderm
4
definitive endodermal cell
2
embryonic stem cell
2
endocrine cell
2
posterior foregut
2
+ See 2 more…
cell line
HepG2
5
See all biosamples
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