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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
857
ChIP-seq
296
total RNA-seq
141
single cell RNA-seq
84
RNA microarray
64
ATAC-seq
28
snATAC-seq
17
WGBS
12
DNase-seq
5
GRO-seq
4
RRBS
2
FAIRE-seq
1
Hi-C
1
MPRA
1
pCHi-C
Assay category
296
Transcription
1
3D chromatin structure
Date released
89
August, 2017
80
February, 2023
49
August, 2021
26
September, 2018
16
September, 2020
15
February, 2018
6
April, 2018
6
May, 2022
5
January, 2019
2
July, 2018
2
October, 2018
1
December, 2018
Available data
1321
tsv
1289
bigWig
1288
bam
244
fastq
59
txt
23
hic
20
bedpe bed3+
7
bed bed3+
5
hdf5
3
cool
1
bedpe
Organism
297
Homo sapiens
Biosample type
156
tissue
120
primary cell
15
in vitro differentiated cells
6
cell line
Organ
184
pancreas
81
epithelium
49
kidney
6
liver
4
bone element
4
embryo
4
skeleton
Project
205
AMP
92
HPAP
Genome assembly (visualization)
145
GRCh38
145
hg19
Lab
150
AMP-T2D consortium
92
Klaus Kaestner, Upenn
49
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
297 results
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total RNA-seq
Hi-C
tissue
islet of Langerhans
103
kidney
49
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 1 more…
primary cell
pancreatic alpha cell
52
exocrine cell
39
pancreatic beta cell
21
pancreatic acinar cell
4
pancreatic ductal cell
4
in vitro differentiated cells
pancreatic endoderm
4
definitive endodermal cell
2
embryonic stem cell
2
endocrine cell
2
posterior foregut
2
+ See 2 more…
cell line
HepG2
5
1
See all biosamples
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