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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
832
ChIP-seq
238
total RNA-seq
128
single cell RNA-seq
61
ATAC-seq
27
snATAC-seq
17
WGBS
12
DNase-seq
5
GRO-seq
4
RRBS
2
FAIRE-seq
1
Hi-C
1
pCHi-C
Assay category
238
Transcription
1
3D chromatin structure
Date released
89
August, 2017
76
February, 2023
26
September, 2018
16
September, 2020
15
February, 2018
6
April, 2018
6
May, 2022
January, 2019
2
July, 2018
2
October, 2018
1
December, 2018
Available data
1316
tsv
1284
bigWig
1283
bam
239
fastq
59
txt
23
hic
20
bedpe bed3+
7
bed bed3+
5
hdf5
3
cool
1
bedpe
Organism
239
Homo sapiens
Biosample type
120
primary cell
103
tissue
15
in vitro differentiated cells
1
cell line
Organ
184
pancreas
81
epithelium
4
embryo
1
liver
Project
147
AMP
92
HPAP
Genome assembly (visualization)
140
GRCh38
140
hg19
Lab
141
AMP-T2D consortium
92
Klaus Kaestner, Upenn
6
Kyle Gaulton, UCSD
month_released!
January, 2019
BIOSAMPLE
ASSAY
239 results
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total RNA-seq
Hi-C
primary cell
pancreatic alpha cell
52
exocrine cell
39
pancreatic beta cell
21
pancreatic acinar cell
4
pancreatic ductal cell
4
tissue
islet of Langerhans
103
in vitro differentiated cells
pancreatic endoderm
4
definitive endodermal cell
2
embryonic stem cell
2
endocrine cell
2
posterior foregut
2
+ See 2 more…
cell line
HepG2
1
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