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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
43
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
74
Transcription
43
DNA binding
3
3D chromatin structure
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
553
February, 2021
406
November, 2017
385
August, 2017
347
May, 2021
277
October, 2019
240
May, 2020
120
August, 2021
120
July, 2018
120
May, 2019
94
December, 2017
93
February, 2023
80
April, 2019
76
October, 2018
70
November, 2018
58
September, 2018
52
July, 2019
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
28
March, 2020
26
May, 2022
25
February, 2020
16
September, 2020
15
October, 2017
6
April, 2018
6
September, 2017
5
December, 2019
4
November, 2020
3
October, 2022
1
March, 2019
1
March, 2023
1
May, 2023
Available data
49
txt
45
bigWig
39
bam
30
bed narrowPeak
25
tsv
24
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
Organism
120
Homo sapiens
Biosample type
52
tissue
36
cell line
28
in vitro differentiated cells
4
primary cell
Organ
50
kidney
32
liver
8
embryo
4
epithelium
2
pancreas
Project
120
AMP
Genome assembly (visualization)
46
hg19
31
GRCh38
Lab
50
Katalin Susztak, Upenn
40
AMP-T2D consortium
30
Bing Ren, UCSD
BIOSAMPLE
ASSAY
120 results
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Clear Filters
total RNA-seq
ChIP-seq
Hi-C
tissue
kidney
49
1
islet of Langerhans
1
1
cell line
HepG2
9
18
1
H1-hESC
8
in vitro differentiated cells
neural progenitor cell
7
21
primary cell
hepatocyte
4
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