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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1036
total RNA-seq
905
ChIP-seq
259
ATAC-seq
177
DNase-seq
174
single cell RNA-seq
28
snATAC-seq
27
WGBS
23
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1036
Transcription
Date released
447
February, 2021
143
May, 2020
120
July, 2018
89
August, 2017
50
August, 2021
39
May, 2021
31
July, 2019
26
May, 2022
24
February, 2020
22
October, 2019
19
November, 2019
13
February, 2023
9
March, 2020
6
April, 2018
1
May, 2023
Available data
933
tsv
907
bam
901
bigWig
103
fastq
59
txt
Organism
1039
Homo sapiens
Biosample type
1039
tissue
243
primary cell
77
cell line
47
in vitro differentiated cells
Organ
455
connective tissue
397
adipose tissue
289
pancreas
170
liver
62
bone element
53
kidney
19
eye
16
brain
15
heart
7
blood vessel
7
limb
7
vasculature
5
musculature of body
5
nerve
4
skeleton
2
artery
2
epithelium
1
spinal cord
Project
1032
AMP
7
T1D
Genome assembly (visualization)
902
GRCh38
902
hg19
Lab
957
AMP-T2D consortium
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
12
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
1039 results
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total RNA-seq
snDrop-seq
tissue
adipose tissue
382
islet of Langerhans
298
liver
167
bone tissue
58
kidney
49
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