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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
451
ChIP-seq
25
total RNA-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
3
pCHi-C
2
DNase-seq
2
HiChIP
1
ATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
25
Transcription
Date released
February, 2021
17
August, 2021
5
January, 2019
2
March, 2020
1
October, 2019
Available data
25
tsv
16
bam
16
bigWig
5
fastq
Organism
25
Homo sapiens
Biosample type
592
tissue
242
primary cell
43
in vitro differentiated cells
25
cell line
Organ
14
liver
8
embryo
1
epithelium
1
kidney
Project
25
AMP
Genome assembly (visualization)
16
GRCh38
16
hg19
Lab
16
AMP-T2D consortium
9
Bing Ren, UCSD
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
month_released!
February, 2021
BIOSAMPLE
ASSAY
25 results
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total RNA-seq
cell line
HepG2
14
H1-hESC
8
early embryonic cell
2
glomerular visceral epithelial cell
1
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