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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
ChIP-seq
178
ATAC-seq
113
total RNA-seq
89
single cell RNA-seq
56
snATAC-seq
47
WGBS
32
pCHi-C
13
Hi-C
10
RRBS
6
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
DNase-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
113
Transcription
Date released
80
February, 2023
16
September, 2020
9
August, 2021
6
May, 2021
2
May, 2020
Available data
390
tsv
bigWig
381
bam
140
fastq
2
bed bed3+
Organism
113
Homo sapiens
Biosample type
tissue
95
primary cell
9
cell line
9
in vitro differentiated cells
Organ
53
epithelium
53
pancreas
9
liver
4
connective tissue
Project
92
HPAP
21
AMP
Lab
92
Klaus Kaestner, Upenn
9
Bing Ren, UCSD
7
AMP-T2D consortium
5
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
biosample_type!
tissue
assay_title!
DNase-seq
files.file_type!
bigWig
BIOSAMPLE
ASSAY
113 results
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total RNA-seq
primary cell
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
monocyte
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
+ See 1 more…
cell line
HepG2
9
in vitro differentiated cells
embryonic stem cell
5
immature adipocyte
2
adipocyte
1
preadipocyte
1
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