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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
480
ChIP-seq
383
total RNA-seq
242
ATAC-seq
189
single cell RNA-seq
56
snATAC-seq
47
WGBS
32
DNase-seq
26
pCHi-C
14
Hi-C
10
RRBS
5
GRO-seq
2
Capture-C
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
383
Transcription
Date released
139
May, 2021
80
February, 2023
47
May, 2020
26
September, 2018
23
February, 2021
16
September, 2020
15
February, 2018
13
July, 2019
7
August, 2021
5
December, 2019
4
November, 2020
4
October, 2019
2
March, 2020
2
October, 2018
Available data
279
bigWig
277
bam
277
tsv
135
fastq
2
bed bed3+
Organism
383
Homo sapiens
Biosample type
tissue
247
primary cell
136
in vitro differentiated cells
cell line
Organ
95
epithelium
81
pancreas
19
connective tissue
6
embryo
6
kidney
5
heart
5
liver
2
artery
2
blood vessel
2
vasculature
1
adipose tissue
1
musculature of body
1
pericardium
Project
195
AMP
96
T1D
92
HPAP
Genome assembly (visualization)
279
hg19
277
GRCh38
Lab
188
AMP-T2D consortium
103
Kyle Gaulton, UCSD
92
Klaus Kaestner, Upenn
Audit category:
93
inconsistent ontology term
biosample_type!
tissue
cell line
BIOSAMPLE
ASSAY
383 results
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total RNA-seq
primary cell
monocyte
54
pancreatic alpha cell
52
exocrine cell
39
pancreatic beta cell
21
hepatocyte
5
+ See 45 more…
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
induced pluripotent stem cell
9
embryonic stem cell
7
neural progenitor cell
7
+ See 21 more…
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