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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
480
ChIP-seq
360
total RNA-seq
237
ATAC-seq
177
single cell RNA-seq
41
WGBS
32
DNase-seq
29
snATAC-seq
25
pCHi-C
14
Hi-C
10
RRBS
5
GRO-seq
2
Capture-C
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
360
Transcription
Date released
139
May, 2021
80
February, 2023
47
May, 2020
26
September, 2018
February, 2021
16
September, 2020
15
February, 2018
13
July, 2019
7
August, 2021
5
December, 2019
4
November, 2020
4
October, 2019
2
March, 2020
2
October, 2018
Available data
256
bigWig
254
bam
254
tsv
135
fastq
2
bed bed3+
Organism
360
Homo sapiens
Biosample type
tissue
246
primary cell
114
in vitro differentiated cells
cell line
Organ
95
epithelium
81
pancreas
14
connective tissue
6
embryo
6
kidney
5
heart
5
liver
2
artery
2
blood vessel
2
vasculature
1
adipose tissue
1
musculature of body
1
pericardium
Project
172
AMP
96
T1D
92
HPAP
Genome assembly (visualization)
256
hg19
254
GRCh38
Lab
165
AMP-T2D consortium
103
Kyle Gaulton, UCSD
92
Klaus Kaestner, Upenn
Audit category:
75
inconsistent ontology term
biosample_type!
tissue
cell line
month_released!
February, 2021
BIOSAMPLE
ASSAY
360 results
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total RNA-seq
primary cell
monocyte
54
pancreatic alpha cell
52
exocrine cell
39
pancreatic beta cell
21
hepatocyte
5
+ See 45 more…
in vitro differentiated cells
cardiomyocytes
59
induced pluripotent stem cell
9
embryonic stem cell
7
neural progenitor cell
7
pancreatic endoderm
4
+ See 21 more…
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