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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
476
ChIP-seq
35
total RNA-seq
20
ATAC-seq
6
MeRIP-seq
5
STARR-seq
5
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
35
Transcription
Date released
February, 2021
17
August, 2021
5
January, 2019
4
March, 2020
4
May, 2021
4
October, 2019
1
November, 2019
Available data
35
tsv
26
bam
26
bigWig
5
fastq
Organism
35
Homo sapiens
Biosample type
593
tissue
246
primary cell
114
in vitro differentiated cells
35
cell line
Organ
14
liver
8
embryo
8
epithelium
7
pancreas
4
kidney
Project
33
AMP
2
T1D
Genome assembly (visualization)
26
GRCh38
26
hg19
Lab
26
AMP-T2D consortium
9
Bing Ren, UCSD
Audit category:
10
inconsistent ontology term
month_released!
February, 2021
BIOSAMPLE
ASSAY
35 results
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total RNA-seq
cell line
HepG2
14
H1-hESC
8
EndoC_BH1
7
early embryonic cell
2
RCC 7860 HIF1a re-expression
1
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