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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
ChIP-seq
109
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
4
Hi-C
4
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
109
Transcription
Date released
78
February, 2021
17
August, 2021
5
January, 2019
4
March, 2020
4
May, 2021
1
November, 2019
Available data
109
tsv
100
bam
100
bigWig
5
fastq
Organism
109
Homo sapiens
Biosample type
987
tissue
241
primary cell
136
in vitro differentiated cells
109
cell line
Organ
52
artery
52
blood vessel
52
heart
52
vasculature
34
epithelium
33
pancreas
14
liver
8
embryo
kidney
Project
107
AMP
2
T1D
Genome assembly (visualization)
100
GRCh38
100
hg19
Lab
100
AMP-T2D consortium
9
Bing Ren, UCSD
Audit category:
33
inconsistent ontology term
organ_slims!
kidney
BIOSAMPLE
ASSAY
109 results
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total RNA-seq
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
HepG2
14
H1-hESC
8
early embryonic cell
2
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