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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
682
ChIP-seq
249
total RNA-seq
71
ATAC-seq
11
pCHi-C
8
Hi-C
6
MeRIP-seq
5
STARR-seq
4
Capture-C
4
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
2
HiChIP
2
single cell RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
249
Transcription
Date released
100
February, 2021
88
May, 2021
24
August, 2021
15
February, 2018
6
March, 2020
6
October, 2019
5
January, 2019
4
February, 2023
1
November, 2019
Available data
240
tsv
231
bam
231
bigWig
20
fastq
Organism
249
Homo sapiens
Biosample type
1037
tissue
247
primary cell
136
in vitro differentiated cells
113
cell line
Organ
53
heart
52
artery
52
blood vessel
52
vasculature
36
epithelium
33
pancreas
14
embryo
14
liver
9
connective tissue
4
kidney
Project
247
AMP
2
T1D
Genome assembly (visualization)
231
GRCh38
231
hg19
Lab
235
AMP-T2D consortium
9
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
Audit category:
125
inconsistent ontology term
BIOSAMPLE
ASSAY
249 results
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total RNA-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
induced pluripotent stem cell
9
embryonic stem cell
7
neural progenitor cell
7
adipocyte
5
pancreatic endoderm
4
cardiomyocytes (cardiac muscle cell)
3
definitive endodermal cell
2
endocrine cell
2
immature adipocyte
2
posterior foregut
2
primitive gut cell
2
cardiac fibroblast
1
endothelial cell
1
hematopoietic multipotent progenitor cell
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
islet precursor cell
1
lymphocyte of B lineage (iPSC)
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
preadipocyte
1
smooth muscle cell
1
stem cell
1
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
HepG2
14
H1-hESC
8
early embryonic cell
2
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
glomerular visceral epithelial cell
1
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