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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
247
Transcription
200
DNA accessibility
Date released
147
May, 2020
88
February, 2023
68
May, 2021
40
September, 2018
39
May, 2022
19
September, 2020
13
July, 2019
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
4
October, 2019
3
August, 2017
2
February, 2021
2
October, 2018
Available data
234
bam
230
bigWig
162
tsv
152
fastq
39
bed narrowPeak
39
zippedFastqFolder
22
bigBed narrowPeak
2
bed bed3+
1
bed bed3
Organism
447
Homo sapiens
Biosample type
1297
tissue
447
primary cell
178
in vitro differentiated cells
142
cell line
Organ
165
epithelium
152
pancreas
12
connective tissue
6
kidney
6
liver
4
heart
2
artery
2
blood vessel
2
vasculature
1
adipose tissue
1
musculature of body
1
pericardium
Project
210
AMP
141
HPAP
96
T1D
Genome assembly (visualization)
236
hg19
199
GRCh38
Lab
208
AMP-T2D consortium
141
Klaus Kaestner, Upenn
98
Kyle Gaulton, UCSD
Audit category:
16
inconsistent ontology term
BIOSAMPLE
ASSAY
447 results
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Clear Filters
total RNA-seq
ATAC-seq
primary cell
pancreatic alpha cell
52
35
monocyte
54
15
pancreatic beta cell
21
23
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
pancreatic acinar cell
4
9
macrophage
11
pancreatic ductal cell
4
4
osteoblast
5
2
CD8-positive, alpha-beta T cell
4
2
hepatocyte
5
B cell
2
2
T follicular helper cell
2
2
T-helper 1 cell
2
2
T-helper 17 cell
2
2
T-helper 2 cell
2
2
central memory CD8-positive, alpha-beta T cell
2
2
effector CD4-positive, alpha-beta T cell
2
2
effector T cell
2
2
effector memory CD8-positive, alpha-beta T cell
2
2
gamma-delta T cell
2
2
mature natural killer cell
2
2
memory B cell
2
2
memory T cell
2
2
memory regulatory T cell
2
2
naive B cel
2
2
naive regulatory T cell
2
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
2
regulatory T cell
2
2
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
immature natural killer cell
1
1
myeloid dendritic cell
1
1
natural killer cell
1
1
plasma cell
1
1
plasmacytoid dendritic cell
1
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
embryonic stem cell
1
endothelial cell of coronary artery
1
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
mesangial cell
1
mesenchymal stem cell of adipose
1
neutrophil
1
pericardium fibroblast
1
renal cortical epithelial cell
1
skeletal muscle myoblast
1
skeletal muscle satellite cell
1
smooth muscle cell of the coronary artery
1
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