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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
188
ATAC-seq
172
ChIP-seq
152
single cell RNA-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
286
Transcription
172
DNA binding
Target of assay
137
histone
137
histone modification
75
broad histone mark
62
narrow histone mark
23
transcription factor
12
control
6
RNA binding protein
Date released
213
May, 2021
81
February, 2023
77
August, 2021
45
May, 2020
26
May, 2022
16
September, 2020
Available data
229
bigWig
186
bam
128
bed narrowPeak
106
tsv
98
fastq
84
tagAlign
55
txt
2
bed bed3+
Organism
458
Homo sapiens
Biosample type
307
primary cell
82
tissue
42
in vitro differentiated cells
27
cell line
Organ
66
pancreas
53
epithelium
49
kidney
47
liver
Project
185
T1D
181
AMP
92
HPAP
Genome assembly (visualization)
229
hg19
180
GRCh38
Lab
AMP-T2D consortium
269
Kyle Gaulton, UCSD
92
Klaus Kaestner, Upenn
49
Katalin Susztak, Upenn
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
4
inconsistent ontology term
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
458 results
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Clear Filters
total RNA-seq
ChIP-seq
primary cell
monocyte
53
84
pancreatic alpha cell
42
exocrine cell
39
CD8-positive, alpha-beta T cell
4
33
pancreatic beta cell
11
+ See 23 more…
tissue
kidney
49
liver
20
islet of Langerhans
12
pancreas
1
in vitro differentiated cells
embryonic stem cell
5
37
cell line
HepG2
9
18
See all biosamples
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