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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
337
total RNA-seq
218
ChIP-seq
74
single cell RNA-seq
69
ATAC-seq
8
DNase-seq
4
Hi-C
4
WGBS
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
1
snATAC-seq
Assay category
337
Transcription
Date released
120
July, 2018
89
August, 2017
40
May, 2021
26
February, 2021
26
September, 2018
20
November, 2019
6
April, 2018
5
March, 2020
2
July, 2019
2
October, 2018
1
February, 2020
Available data
331
tsv
330
bam
330
bigWig
125
fastq
Organism
337
Homo sapiens
Biosample type
276
tissue
33
cell line
28
primary cell
Organ
474
connective tissue
398
adipose tissue
337
pancreas
160
liver
78
epithelium
72
heart
62
bone element
61
blood vessel
61
vasculature
56
artery
19
eye
17
brain
14
embryo
11
kidney
7
limb
6
musculature of body
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
333
AMP
4
T1D
Genome assembly (visualization)
330
GRCh38
330
hg19
Lab
337
AMP-T2D consortium
53
Klaus Kaestner, Upenn
12
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
33
inconsistent ontology term
BIOSAMPLE
ASSAY
337 results
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Clear Filters
total RNA-seq
tissue
islet of Langerhans
272
body of pancreas
3
pancreas
1
cell line
EndoC_BH1
33
primary cell
pancreatic alpha cell
10
pancreatic beta cell
10
pancreatic acinar cell
4
pancreatic ductal cell
4
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