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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
total RNA-seq
141
single cell RNA-seq
86
ChIP-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
16
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
191
Transcription
Date released
81
February, 2023
51
May, 2021
41
May, 2020
16
September, 2020
2
March, 2020
Available data
92
bam
92
bigWig
92
fastq
92
tsv
Organism
191
Homo sapiens
Biosample type
184
primary cell
7
tissue
Organ
60
pancreas
53
epithelium
Project
AMP
99
T1D
92
HPAP
Genome assembly (visualization)
92
GRCh38
92
hg19
Lab
97
Kyle Gaulton, UCSD
92
Klaus Kaestner, Upenn
2
AMP-T2D consortium
Audit category:
inconsistent ontology term
month_released!
July, 2018
audit.ERROR.category!
inconsistent ontology term
award.project!
AMP
BIOSAMPLE
ASSAY
191 results
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total RNA-seq
primary cell
monocyte
53
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
B cell
2
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tissue
islet of Langerhans
7
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