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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
total RNA-seq
105
ChIP-seq
102
ATAC-seq
70
single cell RNA-seq
WGBS
14
DNase-seq
7
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
128
Transcription
Date released
39
February, 2023
26
February, 2021
26
September, 2018
16
September, 2020
6
May, 2021
5
December, 2019
5
July, 2019
October, 2019
2
March, 2020
2
October, 2018
1
November, 2019
Available data
81
fastq
75
tsv
73
bam
73
bigWig
Organism
128
Homo sapiens
Biosample type
91
primary cell
33
cell line
2
in vitro differentiated cells
2
tissue
Organ
474
connective tissue
403
pancreas
398
adipose tissue
188
liver
128
epithelium
70
heart
62
bone element
61
blood vessel
61
vasculature
56
artery
54
kidney
16
brain
14
embryo
6
musculature of body
5
eye
4
skeleton
3
limb
1
nerve
1
pericardium
1
spinal cord
Project
73
AMP
53
HPAP
2
T1D
Genome assembly (visualization)
73
GRCh38
73
hg19
Lab
75
AMP-T2D consortium
53
Klaus Kaestner, Upenn
Audit category:
34
inconsistent ontology term
month_released!
October, 2019
assay_title!
WGBS
BIOSAMPLE
ASSAY
128 results
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total RNA-seq
primary cell
pancreatic alpha cell
52
pancreatic beta cell
21
hepatocyte
5
pancreatic acinar cell
4
pancreatic ductal cell
4
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cell line
EndoC_BH1
33
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
tissue
pigmented layer of retina
2
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