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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1392
ChIP-seq
1363
total RNA-seq
470
ATAC-seq
360
single cell RNA-seq
168
DNase-seq
87
RNA microarray
83
snATAC-seq
74
WGBS
47
pCHi-C
21
Hi-C
16
RRBS
16
small RNA-seq
10
MeRIP-seq
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1363
Transcription
Date released
523
February, 2021
190
May, 2020
120
July, 2018
98
May, 2021
89
August, 2017
89
February, 2023
67
August, 2021
42
July, 2019
October, 2019
26
May, 2022
26
September, 2018
23
February, 2020
20
November, 2019
16
September, 2020
11
March, 2020
6
April, 2018
5
December, 2019
5
January, 2019
4
November, 2020
2
October, 2018
1
May, 2023
Available data
1174
tsv
1143
bam
1139
bigWig
228
fastq
59
txt
2
bed bed3+
Organism
1363
Homo sapiens
Biosample type
1010
tissue
244
primary cell
in vitro differentiated cells
109
cell line
Organ
465
connective tissue
403
pancreas
398
adipose tissue
188
liver
126
epithelium
69
heart
62
bone element
61
blood vessel
61
vasculature
56
artery
54
kidney
16
brain
8
embryo
musculature of body
5
eye
4
skeleton
3
limb
1
nerve
1
pericardium
1
spinal cord
Project
1166
AMP
105
T1D
92
HPAP
Genome assembly (visualization)
1140
hg19
1138
GRCh38
Lab
1082
AMP-T2D consortium
110
Kyle Gaulton, UCSD
92
Klaus Kaestner, Upenn
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
Audit category:
38
inconsistent ontology term
month_released!
October, 2019
organ_slims!
musculature of body
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
1363 results
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Clear Filters
total RNA-seq
tissue
adipose tissue
382
islet of Langerhans
284
liver
166
bone tissue
58
kidney
49
+ See 42 more…
primary cell
monocyte
54
pancreatic alpha cell
52
exocrine cell
39
pancreatic beta cell
21
hepatocyte
5
+ See 42 more…
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
HepG2
14
H1-hESC
8
early embryonic cell
2
See all biosamples
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