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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
618
ChIP-seq
196
total RNA-seq
42
DNase-seq
31
ATAC-seq
8
Hi-C
6
WGBS
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
196
Transcription
42
DNA accessibility
Date released
143
May, 2020
34
June, 2019
20
May, 2022
9
August, 2021
9
October, 2019
5
December, 2019
5
January, 2019
4
February, 2020
4
July, 2019
3
November, 2018
1
August, 2017
1
March, 2020
Available data
204
bam
204
bigWig
176
tsv
41
bed bed3+
41
bed broadPeak
41
bed narrowPeak
41
bigBed broadPeak
41
bigBed narrowPeak
8
fastq
Organism
238
Homo sapiens
Biosample type
217
tissue
14
cell line
7
primary cell
Organ
483
connective tissue
411
pancreas
400
adipose tissue
195
liver
150
epithelium
141
kidney
102
heart
72
vasculature
70
blood vessel
62
bone element
60
artery
49
brain
43
limb
39
musculature of body
23
eye
18
ureter
14
embryo
7
nerve
4
skeleton
2
vein
1
pericardium
1
spinal cord
1
spleen
Project
238
AMP
Genome assembly (visualization)
204
GRCh38
204
hg19
Lab
209
AMP-T2D consortium
20
Karen Mohlke, UNC
9
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
238 results
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total RNA-seq
DNase-seq
tissue
liver
167
2
muscle of arm
17
muscle of leg
13
tibial nerve
5
2
right lobe of liver
3
2
+ See 4 more…
cell line
HepG2
14
primary cell
hepatocyte
5
1
hepatic stellate cell
1
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