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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
Hi-C
3
pCHi-C
0
whole genome sequencing assay
Assay category
20
3D chromatin structure
Date released
10
March, 2020
3
October, 2019
3
October, 2022
2
August, 2021
2
November, 2019
Available data
23
hic
20
bedpe bed3+
5
bed bed3+
5
bigWig
5
hdf5
3
cool
1
bedpe
1
fastq
1
vcf
Organism
20
Homo sapiens
Biosample type
10
tissue
4
in vitro differentiated cells
4
primary cell
2
cell line
Organ
7
pancreas
5
epithelium
3
heart
2
blood vessel
2
liver
2
musculature of body
2
vasculature
1
vein
Project
17
AMP
3
HPAP
Genome assembly (visualization)
19
hg19
Lab
15
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
5
inconsistent ontology term
3
audit script error
BIOSAMPLE
ASSAY
20 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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