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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
484
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
113
Transcription
1
DNA sequencing
Date released
78
February, 2021
18
August, 2021
5
January, 2019
4
March, 2020
4
May, 2021
4
October, 2019
1
November, 2019
Available data
113
tsv
104
bam
104
bigWig
5
fastq
1
vcf
Organism
114
Homo sapiens
Biosample type
1037
tissue
247
primary cell
136
in vitro differentiated cells
114
cell line
Organ
52
artery
52
blood vessel
52
heart
52
vasculature
34
epithelium
33
pancreas
15
liver
8
embryo
4
kidney
Project
112
AMP
2
T1D
Genome assembly (visualization)
104
GRCh38
104
hg19
Lab
104
AMP-T2D consortium
10
Bing Ren, UCSD
Audit category:
36
inconsistent ontology term
BIOSAMPLE
ASSAY
114 results
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total RNA-seq
whole genome sequencing assay
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
HepG2
14
1
H1-hESC
8
early embryonic cell
2
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