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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
4
Hi-C
2
DNase-seq
1
FAIRE-seq
Assay category
31
DNA binding
4
3D chromatin structure
3
DNA accessibility
Target of assay
30
histone
30
histone modification
20
broad histone mark
10
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
30
May, 2021
3
August, 2017
3
October, 2022
1
March, 2020
1
October, 2019
Available data
180
fastq
153
zippedFastqFolder
94
bigWig
84
bam
34
bed narrowPeak
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3+
5
hic
4
bed broadPeak
4
bedpe bed3+
4
bigBed broadPeak
4
bigBed narrowPeak
4
hdf5
3
cool
2
csv
2
tagAlign
1
tar
Organism
38
Homo sapiens
Biosample type
111
tissue
48
cell line
38
primary cell
11
in vitro differentiated cells
Organ
5
epithelium
3
pancreas
2
blood vessel
2
vasculature
2
vein
Project
35
AMP
3
HPAP
Genome assembly (visualization)
292
hg19
GRCh38
Lab
30
Kyle Gaulton, UCSD
5
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
assembly!
GRCh38
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
Hi-C
DNase-seq
FAIRE-seq
primary cell
CD8-positive, alpha-beta T cell
30
skeletal muscle myoblast
1
2
endothelial cell of umbilical vein
1
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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