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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
9
total RNA-seq
5
STARR-seq
5
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
11
Transcription
1
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Date released
15
August, 2021
5
February, 2023
4
March, 2020
2
March, 2023
1
December, 2018
1
May, 2020
1
November, 2018
1
October, 2022
Available data
14
tsv
2
fastq
1
bam
1
bed bedMethyl
1
bigBed bedMethyl
1
bigWig
1
txt
1
vcf
Organism
27
Homo sapiens
Biosample type
585
tissue
279
primary cell
30
cell line
18
in vitro differentiated cells
7
stem cell
Organ
25
epithelium
pancreas
15
liver
4
kidney
1
mammary gland
Project
23
AMP
5
T1D
2
community
Genome assembly (visualization)
hg19
82
GRCh38
Lab
15
Bing Ren, UCSD
8
AMP-T2D consortium
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
3
inconsistent ontology term
assembly!
hg19
organ_slims!
pancreas
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
30 results
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total RNA-seq
STARR-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
Hi-C
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
9
2
1
1
1
1
EndoC_BH1
3
2
EndoC-BH1
1
1
HEK293T
2
MCF-7
1
MIN6
1
RCC 7860 VHL
1
RCC 7860 vector
1
Synthesized DNA
1
fibroblast cell line
1
See all biosamples
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