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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
13
single cell RNA-seq
1
MPRA
1
whole genome sequencing assay
Assay category
72
Transcription
DNA accessibility
1
DNA sequencing
Date released
89
February, 2021
58
August, 2021
6
May, 2022
4
February, 2023
1
October, 2022
Available data
362
bam
358
fastq
186
tsv
157
txt
152
tagAlign
147
bigWig
108
bed narrowPeak
93
zippedFastqFolder
38
bed broadPeak
34
bigBed narrowPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
17
bigBed broadPeak
10
bed bed3+
8
csv
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
157
Homo sapiens
Biosample type
156
tissue
2
cell line
Organ
88
bone element
62
kidney
6
pancreas
4
skeleton
1
liver
Project
158
AMP
Lab
94
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
84
inconsistent ontology term
5
audit script error
assembly!
GRCh38
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
158 results
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RNA microarray
total RNA-seq
single cell RNA-seq
MPRA
whole genome sequencing assay
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
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cell line
HepG2
1
MIN6
1
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