Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
6
single cell RNA-seq
5
Hi-C
3
total RNA-seq
1
WGBS
1
pCHi-C
Assay category
26
DNA binding
9
Transcription
5
3D chromatin structure
DNA accessibility
1
DNA methylation
Target of assay
21
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
13
October, 2019
11
May, 2019
6
August, 2021
3
February, 2020
3
July, 2019
3
March, 2020
2
February, 2021
1
November, 2017
Available data
27
bam
10
tsv
5
bigWig
3
hic
2
bed bed3+
2
bed broadPeak
2
bedpe bed3+
2
bigBed broadPeak
2
hdf5
2
tagAlign
1
fastq
Organism
42
Homo sapiens
Biosample type
28
tissue
12
primary cell
2
cell line
Organ
239
liver
205
pancreas
158
epithelium
140
kidney
127
heart
98
connective tissue
89
bone element
66
brain
64
adipose tissue
44
vasculature
42
blood vessel
41
musculature of body
27
eye
26
limb
13
artery
12
nerve
10
lung
9
spleen
9
vein
8
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
42
AMP
Genome assembly (visualization)
139
hg19
GRCh38
Lab
42
AMP-T2D consortium
Audit category:
1
audit script error
assembly!
GRCh38
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
42 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
WGBS
pCHi-C
tissue
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
coronary artery
2
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
7
2
brain microvascular endothelial cell
1
1
endothelial cell of hepatic sinusoid
1
cell line
smooth muscle cell of the coronary artery
2
See all biosamples
Download