Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
4
FAIRE-seq
3
ATAC-seq
2
DNase-seq
Assay category
34
DNA binding
9
DNA accessibility
Target of assay
33
transcription factor
5
RNA binding protein
2
chromatin remodeller
1
histone
1
histone modification
1
narrow histone mark
Date released
32
November, 2017
4
August, 2017
3
October, 2019
2
July, 2019
1
May, 2019
1
November, 2018
Available data
400
bam
331
fastq
230
bigWig
190
tsv
172
bed narrowPeak
161
txt
150
tagAlign
73
zippedFastqFolder
43
bigBed narrowPeak
38
bed broadPeak
18
bedpe bed3+
16
bigBed broadPeak
16
hic
13
bed bed3+
13
bed bedMethyl
13
bigBed bedMethyl
10
bed bed3
8
csv
7
bed bedgraph
3
tar
2
hdf5
2
ibed
1
bedpe
Organism
43
Homo sapiens
Biosample type
32
cell line
6
tissue
3
primary cell
2
in vitro differentiated cells
Organ
32
liver
3
connective tissue
2
pancreas
1
adipose tissue
1
blood vessel
1
brain
epithelium
1
kidney
1
limb
1
musculature of body
1
vasculature
1
vein
Project
43
AMP
Genome assembly (visualization)
GRCh38
893
hg19
Lab
43
AMP-T2D consortium
Audit category:
7
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
assay_slims!
DNA sequencing
organ_slims!
epithelium
BIOSAMPLE
ASSAY
43 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
FAIRE-seq
ATAC-seq
DNase-seq
cell line
HepG2
32
tissue
adipose tissue
1
frontal cortex
1
islet of Langerhans
1
kidney
1
muscle of leg
1
+ See 1 more…
primary cell
skeletal muscle myoblast
1
2
in vitro differentiated cells
adipocyte
2
See all biosamples
Download