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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
59
total RNA-seq
26
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
2
ATAC-seq
1
RNA microarray
Assay category
165
Transcription
26
DNA binding
8
DNA accessibility
3
3D chromatin structure
DNA sequencing
Target of assay
11
control
11
transcription factor
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
Date released
212
August, 2021
145
August, 2017
123
November, 2017
101
February, 2021
95
October, 2019
82
February, 2023
66
May, 2021
66
May, 2022
47
March, 2020
47
September, 2023
32
May, 2020
29
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
17
December, 2017
16
April, 2019
16
July, 2019
10
November, 2020
9
October, 2017
8
February, 2018
8
January, 2018
8
January, 2021
8
November, 2018
5
December, 2018
5
December, 2019
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
September, 2017
3
March, 2019
3
May, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
108
tsv
57
txt
16
bed narrowPeak
16
bigWig
7
bam
7
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
Organism
211
Homo sapiens
Biosample type
165
tissue
35
cell line
12
in vitro differentiated cells
primary cell
Organ
92
heart
66
kidney
30
liver
6
blood vessel
6
vasculature
5
connective tissue
4
pancreas
2
artery
2
epithelium
1
adipose tissue
Project
212
AMP
Genome assembly (visualization)
GRCh38
57
hg19
Lab
109
AMP-T2D consortium
64
Katalin Susztak, Upenn
35
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assembly!
GRCh38
assay_slims!
DNA sequencing
biosample_type!
primary cell
BIOSAMPLE
ASSAY
212 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
ATAC-seq
RNA microarray
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
18
2
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
8
adipocyte
1
1
osteoblast
1
1
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