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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
4
Hi-C
3
total RNA-seq
1
pCHi-C
Assay category
19
DNA binding
12
Transcription
10
DNA accessibility
4
3D chromatin structure
Target of assay
17
control
2
histone
2
histone modification
2
narrow histone mark
Date released
19
April, 2020
17
October, 2019
4
July, 2019
3
February, 2020
2
May, 2019
1
March, 2020
Available data
18
bam
4
tsv
1
bed narrowPeak
1
bigBed narrowPeak
1
bigWig
Organism
45
Homo sapiens
Biosample type
46
tissue
Organ
311
pancreas
259
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
27
AMP
19
LungMap
Genome assembly (visualization)
GRCh38
96
hg19
Lab
27
AMP-T2D consortium
19
Xin Sun, UCSD
assembly!
GRCh38
assay_slims!
DNA sequencing
BIOSAMPLE
ASSAY
46 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
Hi-C
total RNA-seq
pCHi-C
tissue
lung
10
9
1
tibial nerve
11
1
tibial artery
5
1
gastrocnemius medialis
4
1
muscle of leg
2
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