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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
25
ATAC-seq
9
total RNA-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
25
DNA accessibility
11
Transcription
4
3D chromatin structure
Date released
16
February, 2023
10
May, 2021
6
March, 2020
4
August, 2021
4
February, 2021
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
16
bigWig
7
bed bedgraph
7
bedpe bed3+
6
bed bed3+
5
bed bed3
5
fastq
4
bed narrowPeak
4
hic
4
tsv
3
txt
2
bigBed narrowPeak
2
ibed
Organism
51
Homo sapiens
Biosample type
601
tissue
480
primary cell
60
cell line
51
in vitro differentiated cells
7
stem cell
Organ
24
connective tissue
1
adipose tissue
1
embryo
Project
51
AMP
Genome assembly (visualization)
178
hg19
GRCh38
4
hg18
Lab
34
AMP-T2D consortium
10
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
14
inconsistent ontology term
2
audit script error
assembly!
GRCh38
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
51 results
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ATAC-seq
total RNA-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
6
5
1
adipocyte
8
1
1
cardiomyocytes (cardiac muscle cell)
2
2
2
chondrocyte
5
immature adipocyte
2
2
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