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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
ChIP-seq
total RNA-seq
20
ATAC-seq
4
Hi-C
4
WGBS
3
pCHi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
192
DNA binding
21
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
1
Transcription
Target of assay
107
control
52
transcription factor
33
histone
33
histone modification
19
narrow histone mark
14
broad histone mark
7
RNA binding protein
2
chromatin remodeller
1
recombinant protein
Date released
98
November, 2017
35
August, 2017
32
May, 2020
23
August, 2021
20
May, 2022
13
December, 2017
3
July, 2019
2
February, 2021
2
March, 2020
1
December, 2018
1
November, 2018
Available data
150
bam
122
fastq
94
bigWig
74
bed narrowPeak
55
tagAlign
32
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
3
tar
2
bed bed3+
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
2
tsv
1
csv
1
hdf5
1
vcf
Organism
230
Homo sapiens
Biosample type
124
cell line
102
tissue
3
primary cell
1
in vitro differentiated cells
Organ
238
pancreas
230
liver
175
epithelium
124
heart
112
connective tissue
100
kidney
89
bone element
65
adipose tissue
57
brain
42
vasculature
41
musculature of body
40
blood vessel
36
eye
23
limb
20
lung
15
blood
15
bodily fluid
11
artery
11
nerve
10
vein
9
spleen
8
embryo
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
230
AMP
Genome assembly (visualization)
466
hg19
GRCh38
Lab
188
AMP-T2D consortium
22
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
8
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
assay_title!
DNAme array
total RNA-seq
BIOSAMPLE
ASSAY
230 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
117
2
2
2
1
tissue
liver
70
20
1
3
1
1
1
right lobe of liver
3
1
1
primary cell
hepatocyte
1
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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