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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
total RNA-seq
27
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
2
ATAC-seq
1
RNA microarray
1
whole genome sequencing assay
Assay category
106
Transcription
27
DNA binding
8
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
11
transcription factor
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
Date released
174
May, 2022
162
August, 2017
155
August, 2021
147
February, 2021
132
May, 2020
126
November, 2017
114
May, 2021
93
October, 2019
77
February, 2023
47
September, 2023
46
March, 2020
40
September, 2020
29
July, 2019
29
October, 2018
24
May, 2019
19
April, 2020
17
December, 2017
16
April, 2019
16
January, 2021
10
November, 2020
9
November, 2018
9
October, 2017
8
February, 2018
8
January, 2018
8
June, 2019
5
December, 2018
5
December, 2019
4
January, 2019
4
March, 2023
4
November, 2019
4
October, 2022
4
September, 2017
3
March, 2019
3
May, 2023
1
August, 2018
1
August, 2022
1
September, 2018
Available data
98
tsv
16
bed narrowPeak
16
bigWig
8
bam
8
tagAlign
8
txt
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
154
Homo sapiens
Biosample type
115
tissue
27
cell line
12
in vitro differentiated cells
1
primary cell
Organ
92
heart
23
liver
17
kidney
6
blood vessel
6
vasculature
5
connective tissue
3
epithelium
3
pancreas
2
artery
1
adipose tissue
Project
155
AMP
Genome assembly (visualization)
GRCh38
45
hg19
Lab
110
AMP-T2D consortium
26
Bing Ren, UCSD
15
Katalin Susztak, Upenn
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assembly!
GRCh38
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
155 results
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single cell RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
ATAC-seq
RNA microarray
whole genome sequencing assay
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
kidney
8
6
1
+ See 11 more…
cell line
HepG2
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
8
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
1
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