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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
6
Hi-C
5
RRBS
total RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
26
DNA binding
6
3D chromatin structure
5
DNA methylation
2
DNA accessibility
1
Transcription
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
6
control
Date released
26
August, 2017
5
July, 2019
3
March, 2020
2
June, 2019
2
May, 2019
2
May, 2022
1
January, 2018
Available data
15
bigWig
15
tagAlign
14
bed narrowPeak
13
bed broadPeak
4
bam
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
1
bigBed narrowPeak
1
tsv
1
txt
Organism
41
Homo sapiens
Biosample type
38
tissue
3
primary cell
Organ
238
pancreas
230
liver
175
epithelium
124
heart
112
connective tissue
100
kidney
89
bone element
65
adipose tissue
57
brain
42
vasculature
41
musculature of body
40
blood vessel
36
eye
23
limb
20
lung
15
blood
15
bodily fluid
11
artery
11
nerve
10
vein
9
spleen
8
embryo
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
41
AMP
Genome assembly (visualization)
69
hg19
GRCh38
Lab
41
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assembly!
GRCh38
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
Hi-C
RRBS
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
gastrocnemius medialis
4
psoas muscle
2
1
muscle of leg
2
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
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