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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
605
ChIP-seq
297
ATAC-seq
263
single cell RNA-seq
250
total RNA-seq
87
RNA microarray
84
snATAC-seq
58
WGBS
57
pCHi-C
32
Hi-C
21
RRBS
10
MeRIP-seq
5
DNase-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
79
DNA methylation
Date released
41
May, 2022
19
July, 2019
13
August, 2017
6
February, 2021
Available data
41
zippedFastqFolder
19
bed bedMethyl
19
bigBed bedMethyl
12
fastq
6
tsv
1
bam
Organism
79
Homo sapiens
Biosample type
57
primary cell
22
tissue
Organ
53
epithelium
49
pancreas
6
liver
5
connective tissue
5
musculature of body
4
adipose tissue
4
heart
4
kidney
2
brain
2
vasculature
1
blood vessel
1
eye
1
pericardium
Project
47
HPAP
32
AMP
Genome assembly (visualization)
19
hg19
GRCh38
Lab
47
Klaus Kaestner, Upenn
32
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assembly!
GRCh38
BIOSAMPLE
ASSAY
79 results
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WGBS
RRBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 7 more…
tissue
liver
3
1
skeletal muscle tissue
4
heart left ventricle
2
1
subcutaneous abdominal adipose tissue
3
adipose tissue
1
+ See 7 more…
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