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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
13
single cell RNA-seq
6
WGBS
4
ATAC-seq
3
ChIP-seq
3
snDrop-seq
2
pCHi-C
Assay category
13
Transcription
6
DNA methylation
4
DNA accessibility
3
DNA binding
Target of assay
3
control
Date released
214
August, 2021
199
May, 2022
170
February, 2023
162
August, 2017
134
May, 2020
124
November, 2017
123
May, 2021
115
February, 2021
106
October, 2019
56
September, 2020
48
March, 2020
47
September, 2023
29
July, 2019
29
October, 2018
25
February, 2020
24
May, 2019
19
April, 2020
17
December, 2017
16
April, 2019
16
January, 2021
10
November, 2020
9
November, 2018
9
October, 2017
8
February, 2018
8
January, 2018
8
June, 2019
5
December, 2018
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
September, 2017
3
March, 2019
3
May, 2023
1
August, 2018
1
December, 2019
1
October, 2022
1
September, 2018
Available data
84
txt
18
fastq
9
tsv
4
bam
4
bed bedgraph
3
tagAlign
2
bed bed3+
1
csv
Organism
115
Homo sapiens
Biosample type
88
tissue
19
primary cell
4
cell line
4
in vitro differentiated cells
Organ
84
bone element
6
epithelium
6
pancreas
5
connective tissue
3
kidney
2
artery
2
blood vessel
2
heart
2
liver
2
vasculature
Project
97
AMP
18
HPAP
Genome assembly (visualization)
574
hg19
GRCh38
Lab
97
AMP-T2D consortium
18
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
audit script error
assembly!
GRCh38
audit.ERROR.category!
audit script error
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
115 results
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Clear Filters
RNA microarray
single cell RNA-seq
WGBS
ATAC-seq
ChIP-seq
snDrop-seq
pCHi-C
tissue
bone element
84
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
liver
1
primary cell
Langerhans cell
12
pancreatic alpha cell
6
osteoblast
1
cell line
smooth muscle cell of the coronary artery
2
HepG2
1
iPSC derived cell line
1
in vitro differentiated cells
adipocyte
4
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