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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
59
total RNA-seq
27
ChIP-seq
6
snATAC-seq
4
STARR-seq
3
Hi-C
2
ATAC-seq
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
165
Transcription
27
DNA binding
8
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
11
transcription factor
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
Date released
211
August, 2021
200
May, 2022
162
August, 2017
159
February, 2023
130
May, 2020
126
November, 2017
106
May, 2021
102
October, 2019
63
February, 2021
56
September, 2020
47
September, 2023
36
March, 2020
29
October, 2018
27
July, 2019
24
February, 2020
23
May, 2019
19
April, 2020
16
April, 2019
16
January, 2021
15
December, 2017
9
November, 2018
9
October, 2017
8
February, 2018
8
January, 2018
5
December, 2018
4
January, 2019
4
July, 2018
4
June, 2019
4
March, 2023
4
November, 2020
4
October, 2022
4
September, 2017
3
December, 2019
3
March, 2019
3
May, 2023
1
August, 2018
1
August, 2022
1
November, 2019
1
September, 2018
Available data
108
tsv
57
txt
16
bed narrowPeak
16
bigWig
8
bam
8
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
210
Homo sapiens
Biosample type
165
tissue
33
cell line
12
in vitro differentiated cells
1
primary cell
Organ
92
heart
66
kidney
32
liver
6
blood vessel
6
vasculature
5
connective tissue
2
artery
2
pancreas
1
adipose tissue
1
epithelium
Project
211
AMP
Genome assembly (visualization)
GRCh38
60
hg19
Lab
108
AMP-T2D consortium
64
Katalin Susztak, Upenn
35
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
assembly!
GRCh38
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
211 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
ATAC-seq
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
18
2
1
1
HEK293T
2
in vitro differentiated cells
neural progenitor cell
8
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
1
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