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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
single cell RNA-seq
74
snATAC-seq
47
WGBS
39
ATAC-seq
18
total RNA-seq
17
pCHi-C
3
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
163
Transcription
113
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
February, 2023
56
September, 2020
47
September, 2023
45
February, 2021
19
April, 2020
17
May, 2021
16
January, 2021
4
March, 2023
3
October, 2022
2
March, 2020
Available data
153
zippedFastqFolder
83
fastq
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
338
Homo sapiens
Biosample type
262
primary cell
77
tissue
2
cell line
2
stem cell
Organ
115
pancreas
105
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
238
HPAP
47
KPMP
35
T1D
19
LungMap
4
community
Genome assembly (visualization)
GRCh38
189
hg19
Lab
238
Klaus Kaestner, Upenn
47
KPMP
33
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
AMP-T2D consortium
Audit category:
30
audit script error
1
inconsistent ontology term
assembly!
GRCh38
award.project!
AMP
month_released!
February, 2023
BIOSAMPLE
ASSAY
343 results
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single cell RNA-seq
snATAC-seq
WGBS
ATAC-seq
total RNA-seq
pCHi-C
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
31
22
15
1
pancreatic beta cell
16
13
1
1
peripheral blood mononuclear cell
8
pancreatic acinar cell
4
1
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tissue
kidney
47
lung
9
10
islet of Langerhans
4
2
pancreas
4
thymus
1
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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