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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
ATAC-seq
4
Hi-C
2
Capture-C
2
total RNA-seq
1
pCHi-C
1
snATAC-seq
Assay category
5
DNA accessibility
4
3D chromatin structure
2
Transcription
Date released
4
February, 2023
4
July, 2019
2
August, 2021
2
May, 2021
1
February, 2021
1
May, 2022
Available data
314
bam
301
fastq
185
tsv
171
bigWig
160
txt
153
zippedFastqFolder
146
tagAlign
139
bed narrowPeak
26
bed broadPeak
21
bedpe bed3+
20
hic
19
bed bedMethyl
19
bigBed bedMethyl
14
bed bed3+
12
bigBed narrowPeak
10
bed bed3
8
csv
7
bed bedgraph
4
bigBed broadPeak
4
hdf5
3
cool
2
ibed
1
bedpe
1
tar
Organism
14
Homo sapiens
Biosample type
7
primary cell
6
in vitro differentiated cells
cell line
1
tissue
Organ
8
connective tissue
3
brain
2
blood vessel
2
epithelium
2
vasculature
1
liver
1
musculature of body
Project
14
AMP
Genome assembly (visualization)
GRCh38
247
hg19
Lab
10
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
1
audit script error
assembly!
GRCh38
biosample_type!
cell line
BIOSAMPLE
ASSAY
14 results
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ATAC-seq
Hi-C
Capture-C
total RNA-seq
pCHi-C
snATAC-seq
primary cell
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
+ See 1 more…
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
tissue
skeletal muscle tissue
1
See all biosamples
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