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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
90
ChIP-seq
Assay category
90
DNA binding
Target of assay
299
control
179
histone
179
histone modification
90
broad histone mark
89
narrow histone mark
54
transcription factor
9
RNA binding protein
5
nucleotide modification
2
chromatin remodeller
1
recombinant protein
Date released
52
August, 2017
22
May, 2021
5
November, 2017
5
October, 2017
5
October, 2019
1
August, 2021
Available data
37
tagAlign
36
bigWig
33
bed narrowPeak
15
bed broadPeak
6
bam
3
bigBed broadPeak
2
fastq
Organism
90
Homo sapiens
Biosample type
61
tissue
26
primary cell
in vitro differentiated cells
3
cell line
Organ
20
adipose tissue
20
connective tissue
14
liver
12
musculature of body
9
brain
9
pancreas
4
blood vessel
4
epithelium
4
vasculature
4
vein
Project
90
AMP
Genome assembly (visualization)
GRCh38
335
hg19
Lab
69
AMP-T2D consortium
20
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
1
inconsistent control read length
assembly!
GRCh38
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
90 results
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ChIP-seq
tissue
subcutaneous abdominal adipose tissue
20
liver
12
skeletal muscle tissue
12
islet of Langerhans
8
brain
5
+ See 2 more…
primary cell
CD8-positive, alpha-beta T cell
20
endothelial cell of umbilical vein
4
naive thymus-derived CD4-positive, alpha-beta T cell
1
neutrophil
1
cell line
HepG2
2
Panc1
1
See all biosamples
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