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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
146
ATAC-seq
28
snATAC-seq
4
FAIRE-seq
1
DNase-seq
Assay category
533
DNA binding
333
Transcription
179
DNA accessibility
23
3D chromatin structure
22
DNA methylation
1
DNA sequencing
Date released
58
February, 2023
39
May, 2022
21
May, 2021
16
October, 2019
10
April, 2020
8
August, 2021
8
January, 2021
4
February, 2021
4
March, 2020
3
January, 2018
2
August, 2017
2
July, 2019
2
March, 2019
1
August, 2022
1
November, 2018
Available data
74
bed narrowPeak
44
bigWig
23
bam
21
fastq
10
bed bed3
7
bed bedgraph
7
bigBed narrowPeak
5
bed bed3+
4
txt
2
tsv
1
bed broadPeak
Organism
178
Homo sapiens
Biosample type
primary cell
135
tissue
25
in vitro differentiated cells
19
cell line
Organ
67
pancreas
30
epithelium
28
eye
21
liver
20
connective tissue
10
lung
7
kidney
4
bone element
4
skeleton
3
adipose tissue
3
brain
2
musculature of body
1
blood
1
bodily fluid
1
pituitary gland
1
skin of body
Project
148
AMP
21
T1D
10
LungMap
Genome assembly (visualization)
GRCh38
346
hg19
Lab
92
AMP-T2D consortium
44
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
5
Struan F.A. Grant, CHOP
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
21
inconsistent ontology term
2
audit script error
assembly!
GRCh38
biosample_type!
primary cell
BIOSAMPLE
ASSAY
179 results
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ATAC-seq
snATAC-seq
FAIRE-seq
DNase-seq
tissue
islet of Langerhans
46
7
1
liver
20
retina
15
pigmented layer of retina
12
lung
10
+ See 11 more…
in vitro differentiated cells
adipocyte
8
embryonic stem cell
6
chondrocyte
5
immature adipocyte
2
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 3 more…
cell line
EndoC_BH1
18
GM12878
1
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