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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
13
single cell RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
72
Transcription
4
DNA accessibility
Date released
89
February, 2021
57
August, 2021
7
February, 2023
7
May, 2022
1
October, 2022
Available data
340
bam
217
fastq
182
tsv
161
txt
149
tagAlign
144
bed narrowPeak
138
bigWig
36
bed broadPeak
33
bigBed narrowPeak
19
bedpe bed3+
17
hic
14
bigBed broadPeak
10
bed bed3
9
bed bedMethyl
9
bigBed bedMethyl
8
bed bed3+
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
vcf
Organism
160
Homo sapiens
Biosample type
157
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
62
kidney
6
pancreas
4
skeleton
1
musculature of body
Project
161
AMP
Genome assembly (visualization)
4
hg19
Lab
95
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
6
audit script error
assembly!
GRCh38
biosample_type!
primary cell
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
161 results
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RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
+ See 3 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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