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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
20
ATAC-seq
6
total RNA-seq
4
WGBS
3
pCHi-C
2
Capture-C
1
RNA microarray
Assay category
75
DNA binding
20
DNA accessibility
6
Transcription
4
DNA methylation
Target of assay
44
histone
44
histone modification
31
control
28
broad histone mark
16
narrow histone mark
Date released
60
August, 2017
18
October, 2018
14
February, 2023
5
August, 2021
4
February, 2021
4
October, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
January, 2018
Available data
26
fastq
24
bam
22
tagAlign
7
bigWig
6
bed bed3+
5
bed bed3
4
bed bedgraph
4
bed narrowPeak
4
tsv
3
bigBed narrowPeak
1
bed broadPeak
1
bedpe bed3+
Organism
110
Homo sapiens
Biosample type
67
tissue
43
in vitro differentiated cells
primary cell
1
stem cell
Organ
257
liver
149
pancreas
141
kidney
124
heart
111
connective tissue
92
bone element
67
adipose tissue
62
brain
53
eye
49
epithelium
40
musculature of body
30
blood vessel
30
vasculature
26
limb
20
lung
13
artery
12
nerve
9
spleen
8
embryo
8
skeleton
7
blood
7
bodily fluid
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
111
AMP
Genome assembly (visualization)
555
hg19
GRCh38
Lab
107
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
assembly!
GRCh38
biosample_type!
primary cell
month_released!
January, 2021
BIOSAMPLE
ASSAY
111 results
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ChIP-seq
ATAC-seq
total RNA-seq
WGBS
pCHi-C
Capture-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
3
1
1
islet of Langerhans
1
in vitro differentiated cells
adipocyte
19
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
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stem cell
mesenchymal stem cell
1
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