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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
Hi-C
3
pCHi-C
Assay category
16
3D chromatin structure
Date released
11
March, 2020
3
October, 2019
2
August, 2021
2
November, 2019
1
August, 2018
Available data
338
bam
227
fastq
181
tsv
161
txt
151
bed narrowPeak
150
tagAlign
145
bigWig
40
bigBed narrowPeak
36
bed broadPeak
19
bedpe bed3+
17
hic
14
bigBed broadPeak
10
bed bed3
9
bed bedMethyl
9
bigBed bedMethyl
8
bed bed3+
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
vcf
Organism
19
Homo sapiens
Biosample type
10
tissue
7
in vitro differentiated cells
primary cell
2
cell line
Organ
4
pancreas
3
heart
2
liver
2
musculature of body
1
adipose tissue
1
blood vessel
1
connective tissue
1
epithelium
1
vasculature
Project
19
AMP
Genome assembly (visualization)
17
hg19
Lab
17
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
assembly!
GRCh38
biosample_type!
primary cell
organ_slims!
nerve
BIOSAMPLE
ASSAY
19 results
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Hi-C
pCHi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
cell line
EndoC_BH1
1
HepG2
1
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