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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
4
WGBS
3
ATAC-seq
2
total RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
55
DNA binding
4
DNA methylation
3
DNA accessibility
2
Transcription
Target of assay
31
histone
31
histone modification
24
control
20
broad histone mark
11
narrow histone mark
Date released
41
August, 2017
18
October, 2018
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
October, 2019
Available data
21
fastq
19
bam
8
tagAlign
3
bigWig
3
tsv
2
bed narrowPeak
1
bed broadPeak
bedpe bed3+
1
bigBed narrowPeak
Organism
65
Homo sapiens
Biosample type
66
tissue
Organ
255
liver
153
pancreas
141
kidney
121
heart
110
connective tissue
92
bone element
66
adipose tissue
62
brain
53
eye
48
epithelium
38
musculature of body
29
blood vessel
29
vasculature
26
limb
20
lung
13
artery
12
nerve
9
spleen
8
embryo
8
skeleton
7
blood
7
bodily fluid
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
66
AMP
Genome assembly (visualization)
424
hg19
GRCh38
Lab
66
AMP-T2D consortium
assembly!
GRCh38
biosample_type!
primary cell
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
66 results
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ChIP-seq
WGBS
ATAC-seq
total RNA-seq
RNA microarray
pCHi-C
tissue
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
1
3
1
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