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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
ChIP-seq
4
WGBS
3
ATAC-seq
2
pCHi-C
2
total RNA-seq
1
GRO-seq
1
RNA microarray
Assay category
62
DNA binding
4
DNA methylation
3
DNA accessibility
2
Transcription
Target of assay
32
histone
32
histone modification
30
control
20
broad histone mark
12
narrow histone mark
Date released
41
August, 2017
18
October, 2018
4
December, 2017
3
February, 2018
2
February, 2020
2
January, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
March, 2020
1
October, 2019
Available data
29
fastq
26
bam
8
tagAlign
4
bigWig
3
tsv
2
bed narrowPeak
1
bed broadPeak
1
bedpe bed3+
1
bigBed narrowPeak
Organism
74
Homo sapiens
Biosample type
66
tissue
9
in vitro differentiated cells
Organ
257
liver
157
pancreas
141
kidney
124
heart
111
connective tissue
92
bone element
67
adipose tissue
62
brain
53
eye
49
epithelium
40
musculature of body
30
blood vessel
30
vasculature
26
limb
20
lung
13
artery
12
nerve
9
spleen
8
embryo
8
skeleton
7
blood
7
bodily fluid
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
75
AMP
Genome assembly (visualization)
453
hg19
GRCh38
1
hg18
Lab
75
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
GRCh38
biosample_type!
primary cell
BIOSAMPLE
ASSAY
75 results
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ChIP-seq
WGBS
ATAC-seq
pCHi-C
total RNA-seq
GRO-seq
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
1
3
1
in vitro differentiated cells
pancreatic endoderm
5
1
Hepatic endoderm
2
white fat cell
1
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