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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
6
Hi-C
4
ATAC-seq
4
RRBS
4
WGBS
4
total RNA-seq
3
pCHi-C
1
RNA microarray
1
single cell RNA-seq
1
snATAC-seq
Assay category
79
DNA binding
8
DNA methylation
6
3D chromatin structure
5
DNA accessibility
5
Transcription
Target of assay
51
histone
51
histone modification
32
broad histone mark
28
control
19
narrow histone mark
Date released
67
August, 2017
18
October, 2018
4
February, 2020
4
July, 2019
4
March, 2020
2
January, 2018
2
May, 2019
2
May, 2022
1
August, 2018
1
August, 2021
1
February, 2023
1
October, 2019
Available data
23
fastq
23
tagAlign
21
bam
18
bigWig
16
bed narrowPeak
14
bed broadPeak
6
tsv
3
bedpe bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed narrowPeak
2
hic
1
bed bed3+
1
txt
Organism
106
Homo sapiens
Biosample type
106
tissue
primary cell
1
in vitro differentiated cells
Organ
257
liver
157
pancreas
141
kidney
124
heart
111
connective tissue
92
bone element
67
adipose tissue
62
brain
53
eye
49
epithelium
40
musculature of body
30
blood vessel
30
vasculature
26
limb
20
lung
13
artery
12
nerve
9
spleen
8
embryo
8
skeleton
7
blood
7
bodily fluid
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
107
AMP
Genome assembly (visualization)
485
hg19
GRCh38
Lab
107
AMP-T2D consortium
Audit category:
1
audit script error
assembly!
GRCh38
biosample_type!
primary cell
BIOSAMPLE
ASSAY
107 results
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ChIP-seq
Hi-C
ATAC-seq
RRBS
WGBS
total RNA-seq
pCHi-C
RNA microarray
single cell RNA-seq
snATAC-seq
tissue
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
1
4
1
1
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
3
1
1
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in vitro differentiated cells
white fat cell
1
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